On Oct 28, 2005, at 7:17 p, adriano ceccarelli wrote:
Hi all,
I would like to display sequentially the various states for which
the Ca2+ pump has structures available ina kind of animation. I
have read the archives about the possibility obtaining an animation
of multiple files but I am a bit confused. How do I get a
"concatenated PDB file" ?
hi Adriano,
pretty easy:
1. create a new text file.
2. open one of your structure files and copy the entire contents.
3. paste into the new text file from (1).
4. surround with MODEL # and ENDMDL, like this:
MODEL 1
ATOM...
ATOM...
...
ENDMDL
5. repeat steps 2-4 for each desired structure. end result:
MODEL 1
ATOM...
ATOM...
...
ENDMDL
MODEL 2
ATOM...
ATOM...
...
ENDMDL
MODEL 3
ATOM...
ATOM...
...
ENDMDL
...
in Jmol, each structure can now be accessed using model or (IIRC)
frame. see Bob Hanson's script doc for usage details (<http://
www.stolaf.edu/people/hansonr/jmol/docs/>).
hope that helps!
tim
--
Timothy Driscoll em: [EMAIL PROTECTED]
molvisions - see. grasp. learn. ph: 919-368-2667
<http://www.molvisions.com/> im: molvisions
usa:virginia:blacksburg tx: [EMAIL PROTECTED]
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