On Nov 16, 2005, at 4:24 PM, Miguel wrote:
I think what you want is:
center atomno=23;
show center;
centerAt absolute <x-from-atom-23> <y-from-above> <z-from-above>
So, "from-above" indicates that the y and z coordinates in the
centerAt absolute command come from the show center report, whereas
the X coordinate comes from atom 23's x-coordinate in the pdb file?
Note that in this case, since you specified only one atom, then the
center
that is reported by 'show center' will be the coordinates of that
atom.
OK. If I had specified a group of atoms as the center, for example
center (146, 148, 234) and :a
then "show center" would report the absolute coordinates for that
atomset?
which could then be used in
centerAt absolute <x> <y> <z>
?
So
that when you say 'centerAt absolute x y z' you will be pluggin in the
coordinates from X
this looks like it got cut off...
I have some more questions having to do with centerAt boundbox and
Chime compatibility, but I discussed them extensively with Tim
Driscoll last night and he will post to the list on that.
Best,
Frieda
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