David, the real problem is that you are creating a nonsquare applet. I
understand your desire -- to fit the applet to the user's browser. But
instead of that, I recommend picking the smaller of your two
dimensions, Math.min(frameWidth* .6,frameHeight* .99), and make that
both the height and width. This way the molecule will fit nicely in
the applet.
see http://sourceforge.net/mailarchive/message.php?msg_id=13874696
where Miguel wrote:
In 10.00 the applet was scaled so that the molecule would fit within
the *smaller* of the two dimensions (when displayed with spacefill 100%).
With more recent releases, the molecule is scaled so that it fits
within the *larger* of the two dimensions.
-Bob Hanson
David Marcey wrote:
Thanks to Miguel for the excellent changes in illustrating bonds in pre-release
v. 10.00.47!
I've noticed that this version seems to load molecules translated approx. +130%
on Z (zoomed) and translated approx. +10% (down) on Y compared to the loads with
v. 10.00. This presents no real problem when running the Jmol Application, but
can cause problems for those of us serving multiple molecular displays using the
new Applet. If the sizing and positioning changes do not remain the same in new
versus old versions, many of us will need to significantly edit each molecular
display we serve when new versions are introduced.
For examples, compare the loaded nucleosome pdbs on these web pages:
http://www.clunet.edu/BioDev/omm/test/jmol10_00_47/nucleosome2/start.html (v.
10.00.47)
with
http://www.clunet.edu/BioDev/omm/jmol/nucleosome/start.html (v. 10.00)
Is anyone else noticing this, and if so, is anyone else concerned?
Cheers,
David
--
--
Robert M. Hanson, [EMAIL PROTECTED], 507-646-3107
Professor of Chemistry, St. Olaf College
1520 St. Olaf Ave., Northfield, MN 55057
mailto:[EMAIL PROTECTED]
http://www.stolaf.edu/people/hansonr
"Imagination is more important than knowledge." - Albert Einstein
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