> I appreciate Miquel's effort to accomodate an earlier request to connect > bonds during an animation. > After downloading Jmol version 10.00.48, I used it for an xyz animation > file.
Glad that you have tested it. Be advised that there is currently discussion about changing the script commands for bonding. > A key feature of the script became: select (*/5,*/6,*/7,*/8,*/9,*10) and > bromine; connect (atomno=3). That looks right. > This shows a slow loss of bonding during an alkyl bromide displacement, > and it works well. Without this script, the designated bond breaks too > soon. Good > There is, however, a curious quirk. When the animation starts, > model #1 displays a thin (1 pixel) line eminating from the initially > selected atom (bromine in this case) outward to the upper edge of the > display. This line immediately disappears and does not return in loop > or palindrome mode. > Any thoughts on this behavior? Hmmm ... strange ... sounds very much like a bug. Send me the data file and your script off-list. Please pare down your script as much as possible. Miguel ------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnk&kid3432&bid#0486&dat1642 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
