> 1)I've managed to figure out how to code the following:
> final static String strScript = "select *;  ball-and-stick on";
> and see a ball-and-stick model,


There is no such thing as "ball-and-stick on".

> but I can't for the life of me find
> where the list of options are from which to choose. This was just a
> guess which, luckily, worked.
> Can someone point me at the strScript option list?

It runs valid scripts in the Jmol/RasMol scripting language. See:

  http://www.stolaf.edu/people/hansonr/jmol/docs/

> 2) CDKIntegration2.java AND CDKIntegration3.java do not work under
> NetBeans 5.0. Specifically, the statement:
> viewer.openClientFile("", "", methane);
> fails after creating a molecule of methane as directed. Can someone help
> me to get this going?

You will need to talk with Egon about Jmol integration with CDK.

I strongly suggest that you get a basic understanding of the standalone
Jmol application before you try to work with it at the SDK level. The
application will give you a playground where you can familiarize yourself
with scripting commands and confirm that your molecular model files are
valid.



Miguel



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