On Feb 19, 2006, at 7:46 p, Jeff Hansen wrote:
We are working on a project in which we would like to use Jmol to
visualize hemoglobin and animate how the structure changes when
oxygen binds. Does anyone have any suggestions of how we could
generate the necessary pdb or xyz file? I'm guessing it would
require some kind of molecular dynamics or something or maybe
someone has already done this? Any help would be greatly appreciated.
hi Jeff,
check out MolVizIndex for some Chime examples:
<http://molvis.sdsc.edu/visres/ready-to-use/titles.jsp#H>
off the top, how about putting bound and unbound structures in a
single file as different models? then you can use Jmol's built-in
anim commands to flip back-and-forth. this is how most of the Chime
modules displayed this kind of thing, in Hg and others.
best,
tim
--
Timothy Driscoll em: [EMAIL PROTECTED]
molvisions - see. grasp. learn. ph: 919-368-2667
<http://www.molvisions.com/> im: molvisions
usa:virginia:blacksburg tx: [EMAIL PROTECTED]
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