as a matter of fact, there is.... in the prototype:

http://www.stolaf.edu/people/hansonr/jmol/test/json

I added this because it seemed so useful in terms of getting just
the atomInfo for the visible:

myArray=jmolGetPropertyAsArray("atomInfo","visible")

for example.


Eric Martz wrote:

I have scripted a view by displaying all atoms, then using "restrict not" to subtract atoms, chains, or groups listed in javascript arrays -- "chipping away" at the molecule step by step. The result is a view of a specified subset of the atoms.

Now I want to center the remaining visible atoms. But I don't have a convenient way to select them.

Is there a command along the lines of "select visible" or "select displayed"?

If not, should there be, for convenience? Perhaps it would not be difficult to add?


----
Eric Martz, Professor Emeritus, Dept Microbiology
University of Massachusetts, Amherst MA US
http://www.umass.edu/molvis/martz



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