This was fixed Feb. 18. Next update will incorporate it; the prototype
files are in http://www.stolaf.edu/people/hansonr/jmol/test/json
(this also fixes the select resno < nnn problem)
Index: Dots.java
===================================================================
RCS file: /cvsroot/jmol/Jmol/src/org/jmol/viewer/Dots.java,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- Dots.java 10 Nov 2005 15:52:40 -0000 1.9
+++ Dots.java 18 Feb 2006 18:05:10 -0000 1.10
@@ -192,6 +192,8 @@
}
// no translucency for dots
if ("colorConvex" == propertyName) {
+ if(colixesConvex == null)
+ return;
System.out.println("Dots.setProperty('colorConvex')");
short colix = Graphics3D.getColix(value);
for (int i = atomCount; --i >= 0; )
Hi all,
I tested Jmol Version 10.00.48 with my Jmol Interface and it freezed
when I applied molecule coloring commands. With Jmol Version 10.00.36
there was no coloring problem.
When I analyzed the problem it showed up that at least the 'color dots'
command seems to be broken.
When I type for example 'color dots red' in the Jmol console window Jmol
freezes and I get the following error message in the Java console:
Dots.setProperty('color')
Dots.setProperty('colorConvex')
java.lang.NullPointerException
at org.jmol.viewer.Dots.setProperty(Dots.java:199)
at org.jmol.viewer.Dots.setProperty(Dots.java:189)
at org.jmol.viewer.Frame.setShapeProperty(Frame.java:757)
at org.jmol.viewer.ModelManager.setShapeProperty(ModelManager.java:347)
at org.jmol.viewer.Viewer.setShapeProperty(Viewer.java:1838)
at org.jmol.viewer.Eval.colorObject(Eval.java:1621)
at org.jmol.viewer.Eval.color(Eval.java:1565)
at org.jmol.viewer.Eval.instructionDispatchLoop(Eval.java:336)
at org.jmol.viewer.Eval.run(Eval.java:294)
at java.lang.Thread.run(Unknown Source)
The error occurs independant of the PDB file that is loaded.
Regards,
Rolf
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Robert M. Hanson, [EMAIL PROTECTED], 507-646-3107
Professor of Chemistry, St. Olaf College
1520 St. Olaf Ave., Northfield, MN 55057
mailto:[EMAIL PROTECTED]
http://www.stolaf.edu/people/hansonr
"Imagination is more important than knowledge." - Albert Einstein
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