To follow up on this:
I realized that the suggestion to interpret partail01 as an hbond wasn't
such a good idea, as hbonds are drawn as thin lines.
However, when I checked Bob's 10.1 demo page I noticed something odd (to
me).
The last caffeine command CONNECT MODIFY HBOND turns all the existing
single bonds (between atoms selected in the previous command) into thick
partial single bonds. So these still "exist".
The comment says "#modified hbonds take previous bond's diameter", but
it seems the other way around, "#previous bonds take hbond appearance".
Do I interpret this correctly?
And, can the CML bondtype partial01 be drawn again as a partial single
bond with default wireframe value?
Hens
Sorry for bringing this up rather late, but I noticed that with all
the recent changes in the bond features one of my favourites got lost:
in reaction mechanisms I use the "partial01" bond type as defined in a
cml structure file. It was drawn as a dashed bond, now it is displayed
as a single bond.
Maybe it is solved if the partial01 bond in a CML file is interpreted
as a hbond?
Hens
-------------------------------------------------------
This SF.Net email is sponsored by xPML, a groundbreaking scripting
language
that extends applications into web and mobile media. Attend the live
webcast
and join the prime developer group breaking into this new coding
territory!
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642
_______________________________________________
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
-------------------------------------------------------
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642
_______________________________________________
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
