On May 6, 2006, at 11:19 a, Eric Martz wrote:
At 5/5/06, Tim Driscoll wrote:
select *.1HN6
Did you try
select *.HN6
hi Eric,
yeah, I tried that. no luck. no error, but it doesn't select the
1HN6 atoms either. thanks, though.
I'm not sure what that 1 is. I see at
http://www.pdb.org/pdb/file_formats/pdb/pdbguide2.2/
guide2.2_frame.html
under ATOM
that column 12 is unassigned (presumably a space for readability)
yes, I saw that as well.
and your 1 is in column 13 (13-16 are for atom name) so in some
sense the 1 is part of the atom name.
I dunno; perhaps Jmol thinks it is a chain? <shrug>
I'm stumped. the scripting doc doesn't help, which is not surprising
since this is probably a fairly rare thing. I don't look forward to
the prospect of renaming all such atoms in all of the pdb files that
I need, but I suppose if that's what it takes. :-(
best,
tim
--
Timothy Driscoll em: [EMAIL PROTECTED]
Virginia Bioinformatics Institute ph: 540-231-3007
Bioinformatics I im: molvisions
Washington St., Blacksburg, VA 24061
"Anyone who considers arithmetical methods of producing random digits
is, of course, in a state of sin." - J von Neumann
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