Thanks, Tim > select (nucleic and (backbone,(hydrogen and within(1.9,backbone)))
Elegant! I still haven't get into using "within". What I just did was edit the PDB file (it's just a base pair), change atom IDs by hand, and use a user-defined set. Dirty trick! > so this is also a problem with the protein set as well? I'll have to > go back and see what we did here. Maybe not. As I recall, it was something like my expectation to select one out of two H atoms from Gly alphaC; Miguel argued that they were backbone where I expected sidechain, or the other way round. Anyway, I agreed on the rationale, and solved my problem with a trick as usual (I was translating a Chime version that stopped working the same way in Jmol). If you (and/or somebody else) go back and find the criteria being used, I could help on compiling a doc page explaining these sets, and put it on the Wiki for others. ------------------------------------------------------- All the advantages of Linux Managed Hosting--Without the Cost and Risk! Fully trained technicians. The highest number of Red Hat certifications in the hosting industry. Fanatical Support. Click to learn more http://sel.as-us.falkag.net/sel?cmd=lnk&kid=107521&bid=248729&dat=121642 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
