Steven,
> have not found a property returned by jmolgetpropertyasarray that
> identifies whether an atom is part of the sidechain or backbone. Am
> I overlooking something (obvious)?
Probably not, but I don't know the details of jmolgetpropertyasarray.
What I was suggesting is in the realm of the scripting language,
where sidechain and backbone are recognized tokens.
If you could combine both languages, a test could be set. But maybe
my imagination is taking me too far :-/ ; I cannot see how such
combination can be done.
What I see as feasible is a test for atom names; I suppose
jmolgetpropertyasarray will give you the atom ID, so you can run a
comparison with, say, indexOf("*") for pentose atoms.
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