Re: [Jmol-users] surfaces and JVXL files

[Frieda Reichsman]

On Aug 18, 2006, at 9:24 PM, Bob Hanson wrote: Frieda, what sort of surfaces are you particularly interested in displaying? Bob Solvent-accessible surfaces of macromolecules are what I am accustomed to using vis Chime, hence what I am seeking to create. However I have to admit that I am not aware of what the distinction is between "isosurface" and solvent-accessible surface... Frieda Frieda Reichsman wrote: Hi All, I am interested in fast rendering of surfaces for large molecules. It  seems that Bob Hanson has invented a file format for this purpose,  called JVXL. I have seem Angel Herraez's and Bob's test pages for  surfaces, but I am still puzzled as to how to get started in doing this. To create a JVXL surface file in Jmol, do you first have to load a  CUBE file into Jmol? I have started to read a little about CUBE files  but am unfamiliar with them. How do you generate a CUBE file? Frieda /////////////////////////////////////////// Frieda Reichsman, PhD Molecules in Motion Interactive Molecular Structures http://www.moleculesinmotion.com /////////////////////////////////////////// ------------------------------------------------------------------------ ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 ------------------------------------------------------------------------ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users /////////////////////////////////////////// Frieda Reichsman, PhD Molecules in Motion Interactive Molecular Structures http://www.moleculesinmotion.com ///////////////////////////////////////////

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Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
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