Thanks for that error trace. It indicates that the following line is not being successful:
JmolSelectionListener[] listeners = new JmolSelectionListener[4]; Please try the same by downloading from http://svn.sourceforge.net/viewvc/jmol/branches/v10_9/Jmol/script_documentation/examples-11/JmolApplet.jar If it does the same there, then we have something to fix. Bob Hanson Rajarshi Guha wrote: >Hi, I have some Java code that brings up a Jmol window. I'm calling my >code from within R but when it tries to bring up the Jmol window I get a >SecurityException: > >(C) 2006 Jmol Development >Jmol Version 10.3.1 2006-05-11 11:45 >java.vendor:Sun Microsystems Inc. >java.version:1.5.0_07 >os.name:Linux >Exception in thread "main" java.lang.SecurityException: class >"org.jmol.api.JmolSelectionListener"'s signer information does not match >signer information of other classes in the same package > at java.lang.ClassLoader.checkCerts(ClassLoader.java:775) > at java.lang.ClassLoader.preDefineClass(ClassLoader.java:487) > at java.lang.ClassLoader.defineClass(ClassLoader.java:614) > at > java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124) > at java.net.URLClassLoader.defineClass(URLClassLoader.java:260) > at java.net.URLClassLoader.access$100(URLClassLoader.java:56) > at java.net.URLClassLoader$1.run(URLClassLoader.java:195) > at java.security.AccessController.doPrivileged(Native Method) > at java.net.URLClassLoader.findClass(URLClassLoader.java:188) > at java.lang.ClassLoader.loadClass(ClassLoader.java:306) > at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:268) > at java.lang.ClassLoader.loadClass(ClassLoader.java:251) > at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:319) > at org.jmol.viewer.SelectionManager.<init>(SelectionManager.java:33) > at org.jmol.viewer.Viewer.<init>(Viewer.java:115) > at org.jmol.viewer.Viewer.allocateViewer(Viewer.java:132) > at org.jmol.api.JmolViewer.allocateViewer(JmolViewer.java:51) > at org.guha.rcdk.view.JmolPanel.<init>(JmolPanel.java:20) > at org.guha.rcdk.view.ViewMolecule3D.show(ViewMolecule3D.java:37) >NULL > >Clearly, Jmol is starting up - but I cant see why I should get a >security exception when I'm running the application code (and not as an >applet). > >My system is Fedora Core 5 64 bit, JDK 1.5.0_07, Jmol 10.3.1 > >------------------------------------------------------------------- >Rajarshi Guha <[EMAIL PROTECTED]> >GPG Fingerprint: 0CCA 8EE2 2EEB 25E2 AB04 06F7 1BB9 E634 9B87 56EE >------------------------------------------------------------------- >Got Mole problems? Call Avogadro at 6.02 x 10^23. > > > >------------------------------------------------------------------------- >Using Tomcat but need to do more? Need to support web services, security? >Get stuff done quickly with pre-integrated technology to make your job easier >Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo >http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
