Hello, William 1.- Which version of Jmol are you using? There are some differences between 10.0 and 10.2 with respect to Hbonds.
2.- Your link does not work http://www.people.virginia.edu/~wrp/bioch503_l3.html The requested URL /~wrp/bioch503_l3.html was not found on www.people.virginia.edu (Error 404-NOT_FOUND). 3.- In 10.2 and later, you may need to give hbonds calculate before hbonds on (unless the Hbonds are specified in the PDB content, Jmol will not show any) 4.- Jmol will only show Hbonds between base pairs in nucleic acids and "backbone Hbonds" in proteins, i.e. between peptide CO and peptide NH ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
