On Sep 22, 2006, at 2:38 PM, Bob Hanson wrote:

Frieda Reichsman wrote:

OK, I see the documatation for set (debugging) 
Whew. Sorry for the false alarm.

not sure what the false alarm is about -- did you have debugging turned 
on, so it was slowing it down? Looks fabuolous to me.

Bob

This was a separate topic - the debugging thing - from the post you have quoted below. 

Did you look at both versions below? Because while I agree that the 10.3 version looks good -
http://moleculesinmotion.com/Jmol103/index.htm

the 10.9.62 has the problem of the spacefilled atoms appearing about 4 or so at a time instead of one at a time:
http://moleculesinmotion.com/Jmol10962/index.htm

Please let me know if you also see this behavior.

In addition, if you play the *second* movie, the latter site shows the structure in an initial position that is incorrect, then switches it to the correct position. 

It seems to me that something is going on with the delay commands - is it possible that they are not being processed in the same way in 10.3 and 10.9.62?

Frieda



On Sep 22, 2006, at 1:28 PM, Frieda Reichsman wrote:

Hi Bob,

I have a script designed to display alpha carbon atoms sequentially. 
Works great in 10.3, but in 10.9.62, the atoms show up in bunches. 
Can you see what the problem is? It is important that they show up in 
an orderly fashion as in 10.3. 

You can see the difference by comparing these two pages (you must 
click the first play button to load a molecule and see the example):

http://moleculesinmotion.com/Jmol103/index.htm

versus

http://moleculesinmotion.com/Jmol10962/index.htm


Also, a previous bug was that accessing the Jmol menu caused the 
structure to jump to the window center. This was fixed in 10.2 and 
10.3 but is now broken again in 10.9.62 and in at least one previous 
Jmol 11-beta release that I happen to have on hand.

Frieda

PS I will be getting back to surfaces as soon as I can, but I have 
just not had time...


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Interactive Molecular Structures
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