I have put up a demo page of 10.9.76-10.9.79 functionality at
http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/new.htm
Including:
special frank-based pop-up menu
# Jmol 10.9.79 adds a new pop-up menu that is accessed by clicking on
the Jmol frank. This menu is a quick route to any submenu that you have
recently accessed. Try coloring something using the pop-up menu. Now
color it another color. Notice how long it take to find the right menu
the second time. Now click on the frank and see that your menu is just a
mouse jiggle away.
redesigned pop-up menu
# Jmol 10.9.79 adds a much more dynamic and useful pop-up menu.
select n -
# Jmol 10.9.79 adds open-ended PDB residue selecting.
Chem3D reader
# Jmol 10.9.77 adds a c3xml file reader.
load {ijk i'j'k' 1|0}
# Jmol 10.9.77 adds the capability to load a wider range of unit cell
blocks. The range should include 555 (the base unit cell). The third
parameter, 0 or 1, indicates whether(1) or not(0) to "normalize" the
symmetry operations by moving the geometric center of the generated set
of atoms back into unit cell 555.
hide/display
# Jmol 10.9.76 adds two new commands, hide and display, and two new
selectabled terms, hidden and displayed. They are exact opposites of
each other, provided for convenience only. display is similar to
restrict except it is fully reversible. Like restrict, display hides
unselected atoms, but unlike restrict, you can display all later and see
everything come back as it was before. Examples:
load 1mbo.cif;display HEM;center (displayed);moveto 1.0 -772 -621 -135
158.1 309;
display within(group, within(3.0, hem));select displayed and *.ca;label
%n %r;color labels yellow
select within(group, within(4.0, hem)) and not displayed and *.ca;label
%n %r;color labels red;display within(group, within(4.0, hem));
display within(group, within(3.0, hem)) #back to the other display;
load quartz.cif {444 676 1};display cell=555 or cell=565;polyhedra 4
collapsed yellow;center displayed;moveto 1.0 -200 863 -464 45.0 252;spin
y 10
-------------------------------------------------------------------------
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
