Alan, thanks again for your pointing this out. Comments below -- four
ideas below. In brief -- you found a bug, and the fixed jar files at
http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11 are now
uploaded.
Bob
Alan Hewat wrote:
>Up to 10.9.75 I loaded multiple cells eg {3 3 3} in order to construct
>polyhedra at cell edges, and then did a restrict cell={ 2 2 2 } to hide all
>except the atoms in the central cell. I found that if I had multiple frames in
>my CIF I needed to step through them eg as follows before drawing the
>polyhedra etc.
>'frame 1;unitcell {1 1 1};frame 2;unitcell {1 1 1};frame 3;unitcell {1 1
>1};frame 4;unitcell {1 1 1};'+
>
>
>
1) OK, with the new capabilities for load that I set up for Pat, I would
recommend changing this to
load y12367.cif {444 666 1}
This keeps the unit cell at 0 0 0, and there is no need to move it in
each frame. So that takes care of that. The unit cells should appear
automatically in each frame.
>This worked up to 10.9.75 eg:
><http://icsd.ill.fr/icsd/cifdraw.php?filen=help/y12367.cif&id[]=0>
>but the above multiple frame line hangs 10.9.79.
>
2) That's because there was a bug that affected any application using
"frame 0". It's fixed and is uploading now.
3) I recommend putting your long (and truly outstanding) script into a
.spt file and then just on any page using:
.... load thefile.cif {444 666 1};script hewat.spt;
An advantage of this (I think) is that those script command will then
not appear in the user's console command history. All they will see is
load thefile.cif {444 666 1}
script hewat.spt
Right now they are seeing the full list of script commands.
>Otherwise, I like the idea of simplifying the menus depending on what the user
>seems to be doing, but am not entirely convinced about the dynamic menus, and
>having different menus depending on whether one right-clicks in the background
>or left clicks on the Jmol logo. For example, if I click on the logo and ask
>to view the CIF, not only does this no longer work :-) but afterwards I only
>have access to the models menu from the logo. I have to right-click on the
>background to obtain access to other menus, even the console or the
>Style-Atoms menu (and why so many choices of van der Waals radii and no ionic
>radii?).
>
>
>
4) This is just the very ancient list of options; you tell me what you
want there, and I will get it in. I believe this is all set up now for
USER-DEFINED custom dynamic menus as well. Could be interesting? Maybe
using the "data" command.
>The great thing about Jmol is that so much is possible, and that it can be
>tailored for different audiences by constructing one's own scripts and menus.
>(When I work out how to use multiple CIF frames correctly).
>
>
>
This was just my mistake. Nothing you did.
>Alan.
>_____________________________________________________________
>Dr Alan Hewat, ILL Grenoble, FRANCE<[EMAIL PROTECTED]>fax+33.476.20.76.48
>+33.476.20.72.13 (.26 Mme Guillermet) http://www.ill.fr/dif/people/hewat/
>_____________________________________________________________
>
>
>-------------------------------------------------------------------------
>Using Tomcat but need to do more? Need to support web services, security?
>Get stuff done quickly with pre-integrated technology to make your job easier
>Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
>http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
>_______________________________________________
>Jmol-users mailing list
>[email protected]
>https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
-------------------------------------------------------------------------
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
