On Oct 26, 2006, at 1:38 PM, Angel Herraez wrote: > Timothy Driscoll answered to Rajarshi Guha: > >>> * Since Jmol cannot show multiple structures, I need to convert >>> my SDF >>> to PDB and concatenate it to the protein PDB. Is this correct? >>> >> as far as I know, yes - you will need to concatenate the structures >> as independent MODEL (or perhaps FRAME) records. > > Wrong. Recent versions of Jmol CAN load multiple structures, so there > is no need to concatenate files. Don't know if different formats will > be trouble, but get a current prerelease version of Jmol and try. > and move them independently? that's news to me.
>>> * The PHP page needs to write out a HTML page that contains the >>> code for >>> the applet. But ordinarily I cannot write a file to disk from my PHP >>> page. > > I don't know any PHP, but at least javascript can write an html page > on-the-fly > without saving any temp files. > if you are using php anyway, to query your server-side database, then js is a needless complication IMO. you could use php to write the coordinates as a js variable, then use js to write your applet tag - but why bother? php works outright. >>> * How do I specify that Jmol should load the structures - which are >>> in a >>> string. Do I need to write out a temporary file? >>> >> you should be able to use php to write the Jmol applet and provide >> the structure(s) as an inline param; in other words, I don't think >> you need a tmp file anywhere. for example, if you assign your >> coordinates to a php var, like this: > > I'm quite sure that Jmol has inline loading abilities, but I haven't > used them. Check the documentation. > Jmol does, in fact; my example was actual working code. but I could find no documentation about loadinline. tim -- Timothy Driscoll em: [EMAIL PROTECTED] molvisions - see. grasp. learn. ph: 919-368-2667 <http://www.molvisions.com/> im: molvisions usa:virginia:blacksburg tx: [EMAIL PROTECTED] ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
