I found a funny behaviour of "rockets" on 2hhd.pdb, chain C

Try this: 

load 2hhd.pdb;

restrict *:C;

select all; spacefill off;

select hetero and not solvent; spacefill on;

select protein; cartoons on; rockets on;

 

There are two stretches of alpha helix separated by a turn around residue nr. 
74. Jmol (both 10.2 and 10.9.87) is assigning an alpha secondary structure to 
the turn. As a consequence, instead of two rockets one gets only one, avoiding 
the full path of the two helices and crossing right through the heme group. 

I know rockets are not meant to be too faithful to structure, but this is 
extreme. Very unpedagogical!

 


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