it's a bug. I think a new version will be coming out tomorrow or Monday. 
I'll get this fix into it.

  measure (atomID1) (atomID2)

should measure each atomID1-atomID2 distance in each frame

  measure (X*) (Y*)

only measures the distance between the FIRST matching atom in the entire model 
in each set.

  measure all (X*) (Y*)

measures all possible (X*) (Y*) distances

  measure allconnected (X*) (Y*)

measures all possible (X*) (Y*) distances, but only if X-Y are connected

Bob



Angel Herraez wrote:

>Hi Craig
>
>Try
>monitor all (atomID1) (atomID2)
>
>I find the documentation for this at
>http://www.stolaf.edu/academics/chemapps/jmol/docs/?ver=11.0#measure
>to be confusing, if not plain wrong. It says that by default "all matching 
>criteria in all frames 
>are generated". I understand this to mean what Craig wants, but what I get is 
>that 
>measurements are generated only on the  first frame/model.
>Moreover, documentation for ALL says that it will create measurements from 
>first atomSet to 
>all atoms in the others; however, this is restricted to atoms in the same 
>frame.
>
>
>
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