Dina Schneidman wrote:
> Hi,
>
> is there any way to load multiple molecules in mol2 format in Jmol and 
> to be able to select each one of them?

Hi Dina,

Jmol should be able to read mol2 files with multiple molecules (try Jmol 
11.0.x or 11.1.x).
If it doesn't work, open a bug report and attach a file demonstrating 
the problem.
(see https://sourceforge.net/tracker/?group_id=23629&atid=379133 )

The documentation for anim command can be found at
http://www.stolaf.edu/academics/chemapps/jmol/docs/?ver=11.0#animation

Hope this helps,
Nico


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