Hi I imagined that "set bondMode or" would affect the behaviour of "restrict" and "hide", so that a bond between an atom that won't be hidden and another that will be hidden remains visible. It seems that this is not so. The hidden atom goes away together with its bond. Example: I have a ligand with one covalent bond linking it to a protein. I give "set bondMode or; restrict ligand" or "set bondMode or; hide not ligand" and I would like the ligand and its bond to the protein to be seen (without any atom on the protein). (i.e., the same that happens --regarding bond width instead of showing/hiding-- if I use "set bondMode or; select ligand; wireframe 0.4" )
Does this idea make sense to others? Would it be possible to implement? I would vote as the only option, or the default, since the use of "set bondMode" is quite purposeful, not accidental (the default is "set bondMode and"). ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
