Dear Eric Martz:
I will very happy to tell you what I want to do,and eager to receive your
letter.there are two molecular protein_A and protein_B.
Protein_A is a enzyme, it have a target peptide, Protein_B is a regulatory
protein, the NMR structure of protein_B is a complex which contain protein_B and
target peptide of protein_A, Now They are relaxation state, I want to merge the
two molecular to make a complete complex of protein_A and protein_B.Dock program
is what I want to use firstly.But there may be another better way,because they
have a common target peptide in structure.So maybe you can tell me what is
better.
ÔÚÄúµÄÀ´ÐÅÖÐÔø¾Ìáµ½:
>From: Eric Martz <[EMAIL PROTECTED]>
>Reply-To:
>To: Qiang Zhong <[EMAIL PROTECTED]>,
[email protected]
>Subject: Re: [Jmol-users] How to merge two pdb file?
>Date:Sun, 11 Feb 2007 15:20:00 -0500
>
>Dear Qiang,
>
> Paul Pillot's advice is good.
>
> We can help you better if we know what kind of "merge" you want to do.
>
> Do you want to structurally align two models of the same molecule
> ("on top of each other"), so you can see where they are the same and
> where they differ?
>
> Or do you want to ligate two models of different parts of a molecule,
> to build a complete model from the two parts?
>
> Or something else?
>
> -Eric
>
> At 2/10/2007, you wrote:
> >Hellow:
> >
> > I have download new jmol-11.0, I want to use it to edit
> > protein structure.Now
> >I have two protein structure,They have two same fragments,I want to merge two
> >protein at the same fragments.I don't know how to do?Could someone
> >tell me how to
> >do, Thank you very much!
> >
> >
> >
> >
> >
> >------------------------------
> >Qiang Zhong
> >
> >Key Lab of Agricultural Animal Genetics, Breeding and Reproduction
> >of Ministry of Education
> >
> >College of Animal Sciences and Technology
> >
> >Huazhong Agricultural University
> >
> >Wuhan,Hubei, 430070
> >
> >PR China
> >
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> /* - - - - - - - - - - - - - - - - - - - - - - - - - - -
> Eric Martz, Professor Emeritus, Dept Microbiology
> U Mass, Amherst -- http://www.umass.edu/molvis/martz
>
> Biochem 3D Education Resources http://MolviZ.org
> See 3D Molecules, Install Nothing! - http://firstglance.jmol.org
> Protein Explorer - 3D Visualization: http://proteinexplorer.org
> Workshops: http://workshops.proteinexplorer.org
> World Index of Molecular Visualization Resources: http://molvisindex.org
> ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il
> Atlas of Macromolecules: http://atlas.proteinexplorer.org
> PDB Lite Macromolecule Finder: http://pdblite.org
> Molecular Visualization EMail List (molvis-list):
> http://bioinformatics.org/mailman/listinfo/molvis-list
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>
>
-------------------------------------------------------------------------
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier.
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
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