Jmol users:
You should check out
http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/new.htm
item # 12 is pretty interesting. Amazingly simple to implement. Tim and
Frieda have been doing this for years somehow, but I think this is
easier than ever.
12. variables allowed in Jmol commands
# Jmol 11.1.12 introduces a whole new concept in variables. Once a
variable is assigned a value, you can use it in ANY Jmol command by
prepending an @ sign to it. This allows, for example, variable spacefill
or file names or basically anything. You do have to stay away from
special names for variables such as "radius" -- pick names that you know
will be unique.
load gold.cif {5 5 5};
auRadius = 0.4
spacefill @auRadius; auRadius = auRadius * 1.5
#now click on the above link a few times
script gold.spt # some nice effects are now easily scripted
Check this out:
# fade unwanted atoms
select not selected
auRadius = 1.45
message _here1
auRadius = auRadius - 0.02
spacefill @auRadius
refresh
if (auRadius > 0.02);goto _here1;endif
display not selected
That give anyone some ideas? Fun!
Bob
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