OK, this is fixed. The actual error was that the alpha carbons were not supposed to be clickable -- were not supposed to be able to initiate measurements -- but since you like that feature, it is now set to allow alpha carbon clicking and measuring in backbone, trace, meshribbon, strands, and cartoons, but not rockets -- because the points there can be so far off from actual.
Points will not touch the cartoon (the reason this was supposed to be turned off) unless you have set tracealpha set sheetsmoothing 0 because only then do the cartoons go through the alpha carbons directly. Bob Frieda Reichsman wrote: > Thanks Bob, I sent this to the list shortly thereafter, perhaps you > did not get it: > >> OK, I find that if I display the atoms in spacefill at 50% the >> monitor lines appear. The problem with the monitors not appearing was >> a monitor between two alpha carbons that were in a cartoon display. I >> can get around this by displaying the atoms at a small spacefill >> size, but it would be nice if monitors showed up when alpha carbons >> are measured in cartoon displays. Particularly when using the mouse, >> it's kind of unnerving to have the line be there when measuring and >> then simply disappear when clicking to finish. > >> >> Would it be simple to change this behavior? > > > Frieda > > PS, did you get 2 emails from me on or about Friday or Saturday? > > > > On Feb 26, 2007, at 2:49 PM, Bob Hanson wrote: > >> this is working in 11.1.15 and 11.1.14, I think, though I don't have >> a copy of that to test. It's possible that 11.1.12 is broken in that way. >> >> >> Frieda Reichsman wrote: >> >>> I'm finding that in Jmol 11.1.12, measures do not appear when called >>> in a script, and disappear from the applet when made manually (with >>> the mouse), as soon as they are made. >>> That is, double-click an atom, you get the pink "rubberband" dotted >>> measure line, double-click the second atom, and the measurement >>> disappears. >>> Here's the console output with set debugscript ON, for a manual >>> measurement: >>> >>> [NA]401.NA #2451 -1.163 58.771 -12.03 >>> measurePending: 1.588 nm >>> measurePending: 1.178 nm >>> [ILE]279:A.CA #2020 -10.405 65.385 -8.938 >>> measurePending: 1.178 nm >>> script 12 started >>> measure ( atomIndex = 2449 ) ( atomIndex = 2019 ) >>> measureCompleted: [2, 2449, 2019, 1.178 nm] >>> Script completed >>> Jmol script terminated >>> >>> But no measurement appears in the applet. >>> >>> By accident, I did get a measurement to show up, as follows: >>> Double-click an atom, single click the second atom; pause, then >>> double-click the second atom. >>> >>> Frieda >>> >>> >>> >>> /////////////////////////////////////////// >>> >>> >>> Frieda Reichsman, PhD >>> >>> Molecules in Motion >>> >>> Interactive Molecular Structures >>> >>> http://www.moleculesinmotion.com >>> >>> >>> /////////////////////////////////////////// >>> >>> >>> >> >> > > /////////////////////////////////////////// > > > Frieda Reichsman, PhD > > Molecules in Motion > > Interactive Molecular Structures > > http://www.moleculesinmotion.com > > > /////////////////////////////////////////// > > > ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
