[I appreciate these answers -- I'm still not getting the originals for
some unknown reason.]
The command is
select atomno=8 or atomno=9; wireframe 0.1
"or" here because we need to include both atoms in the set.
In 11.1.16 you can select bonds directly:
select [{0}] selects the first bond, for example. select [{0:2}] selects
the first 3; select [{0 2 4}] selects the first, third, and fifth.
It's the [{...}] that tells Jmol you are selecting a bond. This then
can be used for either "wireframe" or "color bonds"
Also, in 11.1.16 you can use:
x = {atomno=8 or atomno=9}.bonds
wireframe @x_set
x here is specifically the bonds between the those two atoms. It would
have the value 1, but its set is the bond set itself. If you say
message @x_set
you will see something like
x_set = "[{6}]"
Bob
Angel Herraez wrote:
>Hi Nick
>
>Have you tried selecting the atoms that form the bond?
>
>select atomno=8 and atomno=9
>color bonds cyan
>wireframe .1
>
>
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