David, what version are you using? David Leader wrote:
>I'm working with Jmol again (after several months) in relation to my >database-driven web app and have one question and what I fear may be >a feature request. > >1. There is a limit to the extent that I can zoom a motif of a few >amino acids in a large protein, which is marginally insufficient for >my purposes. This is less than one can get with RasMol. I seem to >remember someone else bringing this up. Anyone remember the outcome? > >2. When working with proteins one often wants to label the amino acid >residue rather than all the atoms in the residue. This can be done by >first selecting the alpha-carbon atom and then applying the label >with commands of the sort: > >select lys95.CA >label Lysine 95 (or whatever) > >My problem is that I am programmatically serving data about the >residues I wish label that only includes their residue number, and it >would be a pain to have to modify the whole app to retrieve the amino >acid types as well. However I can find no way of selecting the alpha >carbon atom just on the basis of residue number, without the residue >type. Am I missing something here? Hope so. > I appreciate that 95.CA alone would be ambiguous as the >number could indicate an atom rather than an amino acid, but >something like select aa95.CA, with 'aa' as a wild card for the >appropriate amino acid, would seem possible. > >David > > ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
