Examples of how to use color altloc in general are at: http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/altloc.htm
I tested it with loading two separate models in two separate frames, and that worked, too.. Perhaps if you can send me a url to a page that does not work, I can take a closer look at your particular implementation. Bob Hanson saravanan wrote: > Hi, > I want to do superimposition of two protein structures in Jmol. > Is it possible, I loaded the molecules and executed the command, > "frame all", > now i can see the two protein but with different orientations, i want > to do superimposition and when i coloured them by "colour altloc", its > colouring all molecules in "green" colour.. > > P.Saravanan > > ------------------------------------------------------------------------ > Ahhh...imagining that irresistible "new car" smell? > Check out new cars at Yahoo! Autos. > <http://us.rd.yahoo.com/evt=48245/*http://autos.yahoo.com/new_cars.html;_ylc=X3oDMTE1YW1jcXJ2BF9TAzk3MTA3MDc2BHNlYwNtYWlsdGFncwRzbGsDbmV3LWNhcnM-> > > > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.net email is sponsored by DB2 Express >Download DB2 Express C - the FREE version of DB2 express and take >control of your XML. No limits. Just data. Click to get it now. >http://sourceforge.net/powerbar/db2/ > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users

