Hi Bob, Documentation for set backgroundmodel needs to be corrected,
it currently specifies (integer >= 1)
I *knew* there was a reason I had not tried file.model notation! :^)
- should have tried it anyway!!
On May 14, 2007, at May 14, 5:52 PM, Bob Hanson wrote:
Ah, Frieda, you MUST use file.model notation with multiple files
anywhere you would like to say "model n". Especially with PDB files,
"set backgroundModel 1" would be too ambiguous.
For example:
load files "=1crn.pdb" "=1blu.pdb" "=1hje.pdb"
animation mode palindrome
animation fps 1
set backgroundmodel 1.1
frame range 1.1 3.1
frame play
So I think it's just that one command.
Bob
Frieda Reichsman wrote:
I'm looking for some scripting help. Using Jmol 11.1.38_dev,
I am attempting an animation with four files. Each has one model.
FIle
1 has an isosurface. Bob just wrote a nice post the other day re:
frames and multiple files, but I am stuck nonetheless.
I need to make file 1 stay visible throughout the animation, but
set backgroundModel 1
has no effect.
This is my script:
file 0
display all
animation mode PALINDROME 2.0 2.0
animation fps 1
set backgroundModel 1
frame RANGE 1.1 4.1
frame PLAY
The result is that all the frames are looped through, and file 1
(frame 1) does not remain visible throughout. Changing from
frame RANGE 1.1 4.1
to
frame RANGE 2.1 4.1
just makes it so that frame 1 (file 1) never appears.
Maybe it has something to do with this:
Bob wrote:
frame range 3.0 #all models in file 3
[there is a bug in 11.1.38 in this regard when the file only
contains
one model that I just fixed for 11.2]
which caught my eye since I do only have one model in each file.
But I
am not following what the bug is.
Also, once the animation is stopped, my buttons that allow the
user to
add a file to the current view are broken. If I say
display displayed or file =3
file 3 does not appear.
If I say
file 0; display displayed or file =3
all the files appear.
Frieda
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Frieda Reichsman
Molecules in Motion
Interactive Molecular Structures
http://www.moleculesinmotion.com
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Molecules in Motion
Interactive Molecular Structures
http://www.moleculesinmotion.com
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