I am a novice user of Jmol, and need some help please with the following. (1) I have a series of .cube files, each of which contains a single structure and a single MO.
(2) I wish to animate a sequence using these structures and MOs (rendered as isosurfaces). (3) My attempt is the following script: zap; load files "MO1a.cube" "MO1b.cube" "MO1c.cube" "MO1d.cube"; moveto 0.0 9 -997 82 82.92; spacefill 10%;select all;connect 1.0 (selected)(selected) create;wireframe 5;color bonds grey; isosurface both 0.05 sign blue red "";color isosurface translucent; animation mode once; animation fps 1; frame range 1.1 4.1; frame play; (4) Thus puts the required isosurface on the first frame, but although the molecule appears in frames 2, 3 and 4, no isosurfaces appear. (5) If it is necessary, I can merge all the data into one .cube file. I would appreciate some help and guidance with this. Thank you in advance. James Keeler James Keeler, Director of Teaching Department of Chemistry, University of Cambridge Lensfield Rd, Cambridge CB2 1EW Tel. (01223) 336428 Secretary (Henneli Greyling) 336480 FAX 336362 WWW: www-keeler.ch.cam.ac.uk and www-teach.ch.cam.ac.uk ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
