I'm working on it....
Li Yang wrote: > Hi, > > > > I am running Jmol 11.2.8 stand alone application. Open a PDB file > (for example, 1ABT.pdb), and open the Jmol Script Console window, type > spin on, and clicked the Undo button. The viewer was *hanged* and I > could see this exception: > > > > Exception in thread "Thread-96" > java.lang.ArrayIndexOutOfBoundsException: 73 > > at > org.jmol.modelsetbio.BioPolymer.getProteinStructure(BioPolymer.java:526) > > at > org.jmol.modelsetbio.AlphaMonomer.setProteinStructureType(AlphaMonomer.java:112) > > at > org.jmol.modelset.Atom.setProteinStructureType(Atom.java:1008) > > at > org.jmol.modelset.ModelSet.setProteinType(ModelSet.java:814) > > at > org.jmol.modelset.ModelManager.setProteinType(ModelManager.java:1499) > > at org.jmol.viewer.Viewer.setProteinType(Viewer.java:5699) > > at org.jmol.viewer.Eval.structure(Eval.java:4857) > > at org.jmol.viewer.Eval.instructionDispatchLoop(Eval.java:913) > > at org.jmol.viewer.Eval.runEval(Eval.java:204) > > at > org.jmol.viewer.Viewer.evalStringWaitStatus(Viewer.java:3099) > > at > org.jmol.viewer.ScriptManager.runScript(ScriptManager.java:124) > > at > org.jmol.viewer.ScriptManager.runNextScript(ScriptManager.java:113) > > at > org.jmol.viewer.ScriptManager$ScriptQueueRunnable.run(ScriptManager.java:141) > > at java.lang.Thread.run(Unknown Source) > > > > I have to close the viewer and restart. Can Jmol developers please > take a look at this? > > > > Thanks, > > > > Li Yang > > > > > > > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Splunk Inc. >Still grepping through log files to find problems? Stop. >Now Search log events and configuration files using AJAX and a browser. >Download your FREE copy of Splunk now >> http://get.splunk.com/ > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
