Raphael A. Bauer wrote: >Bob Hanson wrote: > > >>Raphael A. Bauer wrote: >> >> >> >>>Hi Jmol List, >>>if I load a protein and do a "cartoon on" the secondary structure of my >>>protein is displayed even if it is not explicitly written in the (eg) >>>pdb file. >>>Is there any kind of secondary structure prediction involved in this? >>>Thanks, >>> >>> >>> >>> >>oh, yes. >> >> >;) (I nearly guessed that) What kind of prediction algorithm do you use >within Jmol? > > It was designed for Jmol specifically. It uses phi/psi angles; it does not use hydrogen bonding patterns.
>Thanks, >Raphael > > > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Splunk Inc. >Still grepping through log files to find problems? Stop. >Now Search log events and configuration files using AJAX and a browser. >Download your FREE copy of Splunk now >> http://get.splunk.com/ >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
