Joost, and list.... This is fixed for Jmol 11.3.24 (not released yet)
In the mean time, just as easy is to not set the background model and instead use frame 0.0 display 1.1,2.1 # just the protein and first ligand display 1.1 and within(5.0, model=2.2), 2.2 # just the protein near the second ligand and that ligand display 1.1,2.3 # just the first and second ligands etc. also possibly of interest, a new option for WITHIN: isosurface select(1.1 and within(5.0, TRUE, model=2.1)) molecular translucent yellow the added TRUE option allows the within() selection to span all models, not just the model containing the specified atoms -- in thise case, the atoms in model 2.1. This allows creation of isosurfaces for atoms in one model only in the vacinity of atoms in a DIFFERENT model. see also note, below: Kempen, J. van (Joost) wrote: >I loaded a protein and then appended a mol file containing 3 ligands. Is >used the command "set backgroundmodel 1.1" to keep the protein while >scrolling through the ligands in the mol file "frame 2.1;frame 2.2 >etc.". After selecting the non existing frame 2.4, the default didn't >work anymore. Also after calling the command again it didn't work. Only >after calling the command for another frame and than the 1.1 frame again >it worked again. > >I also have a suggestion for a new feature. Especially in drug design, >it would be nice to be able to snap per frame or only one frame instead >of all frames at once. > > > Not sure what you mean by "snap". Maybe that display command is what you are referring to. With it you should be able to display any combination of loaded models. Bob Hanson >Regards, > >Joost van Kempen > > > > > ____________________________________________________________________ > ____________________________________________________________________ > > Joost van Kempen NV Organon > Scientific software developer Room RK 2207 > Molecular Design & Informatics P.O. Box 20 > 5340 BH Oss > CONTACT: The Netherlands > Phone: +31-412-665748 > Fax: +31-412-662539 VISITING: > Mobile: +31-6-28149073 Molenstraat 110 > E-mail: [EMAIL PROTECTED] 5342 CC Oss > ____________________________________________________________________ > ____________________________________________________________________ > >This message, including the attachments, is confidential and may be >privileged. If you are not an intended recipient, please notify the sender >then delete and destroy the original message and all copies. You should not >copy, forward and/or disclose this message, in whole or in part, without >permission of the sender. > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
