Nico has released Jmol 11.3.26 and 11.2.13. Thank you, Nico. 11.2.13 and 11.3.26 ------------------- bug fix -- select within(chain,.....) not working
11.3.26 ------- # new feature: _1 parameter for "first atom" in second expression of connect: connect 3.0 (_H and connected(_N) (_O and not within(chain,_1)) hbond The "_1" in the second expression means "the atom already chosen from the first expression". It is something like the $1 parameter in regular expressions in C++, Perl, Java, or JavaScript. I added it so that Karl could create all INTERmolecular hydrogen bonds without creating any INTRAmolecular bonds in his silk model. It is now documented. May be of general use. For example, you could dispense entirely with the distance parameter in CONNECT and just use: connect (_H and connected(_N) (_O and within(3.0,_1) and not within(chain,_1)) hbond although be advised this is MUCH SLOWER because it has to evaluate that second expression for every atom found by the first, not just once. # new feature: better reporting of PMESH file format errors This is just so that bad files don't simply return "script completed" # bug fix for() as the very first command in script or line. This was causing infinite looping and no incrementing of the FOR variable. APPLICATION: # bug fix: WebPageMaker was not exporting error free xhtml 1.1. # bug fix: WebPageMaker not writing files # bug fix for PAUSE causes app to hang -- this is a reversion of an earlier bug fix implementing SwingUtilities.invokeLater() in ScriptWindow, which actually will not work in ScriptWindow. We need the direct execution in order to avoid the event queue from stopping itself. Question: Who was seeing the problem with Jmol compiling but registering a warning (I think) that threads calling Swing methods were not from the event queue? Well, I had to undo that change, because on some platforms the event queue must NOT be the source of commands generated in the console. It's a long story.... We may have to revisit this one. Only affects the Jmol application, not the applet. Bob -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
