Hi Somy, and welcome to Jmol list.
Please, don't duplicate your posts in users and developers lists.

The AltLoc is in the documentation:
http://chemapps.stolaf.edu/jmol/docs/?ver=11.2#atomexpressions
which takes you to an example page:
http://chemapps.stolaf.edu/jmol/docs/examples-11/altloc.htm

It's all explained there. If you still have problems, please specify which pdb 
file you are working with.



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