Eran Hodis wrote: >Hello, > >I'd like to select sites that have been defined in a pdb file but >have been unable to do so. > >As an example I point to the file 2ace.pdb which includes the >following lines in its PDB file: > >REMARK 800 SITE >REMARK 800 SITE_IDENTIFIER: CAT >REMARK 800 SITE_DESCRIPTION: CATALYTIC TRIAD. > >SITE 1 CAT 3 SER A 200 GLU A 327 HIS A 440 > > >I'd like to be able to issue a command in Jmol that selects a site >either by site number of by site_identifier. How can I do this? It >seems like it is possible from the documentation, but I have so far >not succeeded. > > > Actually, I wasn't aware of this PDB SITE term. That's very interesting, and we will have to implement it. But right now "site" in Jmol means a crystallographic site -- not this. We can implement it as "pdbSite" to distinguish it, I think.
Stay tuned... Bob >Thank you, >Eran Hodis > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Splunk Inc. >Still grepping through log files to find problems? Stop. >Now Search log events and configuration files using AJAX and a browser. >Download your FREE copy of Splunk now >> http://get.splunk.com/ >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
