You have to use
spin y {*} 20
so the spinning is around that geometric center, then to set the slab
while spinning
slab reference {*};slab off;refresh;slab 60;slab on;refresh;slab set
so that the slab reference point is the same as the spinning point.
The refresh perhaps shouldn't be necessary, but it is.
Bob
Karl Oberholser wrote:
> The last button at
> http://www.messiah.edu/departments/chemistry/molscilab/Jmol/myoglobin/chapter03/chapter.htm
> turns
> the slab on, and when slab set is executed from the console the % slab
> is changed before it sets the slab, but the set is observed without
> rotating the structure.
>
> At
> http://www.messiah.edu/departments/chemistry/molscilab/Jmol/acetylcholinesterase/chapter01/chapter.htm
>
> at the bottom of the applet there is a button to turn the slab on, a
> slider to select the % slab and a slab set button. One gets a variety
> of results when you select different % with the slider before slab set.
>
> Karl
>
>
> >>> Bob Hanson <[EMAIL PROTECTED]> 11/15/2007 2:16 PM >>>
> I need some concrete examples here, Karl. Might be not having the
> correct reference atom to define which side of the plane is removed.
>
> Bob
>
>
> Karl Oberholser wrote:
>
> > Hi All,
> >
> > I have found 'slab set' to perform inconsistently. At times it does
> > what you expect it to do, other times the percentage slab is changed
> > before it sets and frequently the slab that it sets is in the back of
> > the molecule so that you have to rotate the structure to see the cut.
> > You never know what the result will be.
> >
> > Karl
> >
> >
> >
> >
> > Karl M. Oberholser, Ph.D. Phone:
> > Professor of Chemistry &n bsp; Voice: 717-766-0512
> > Chemistry & Biochemistry Dept. Fax: 717-691-6046
> > Messiah College e-mail: [EMAIL PROTECTED]
> > P.O. Box 3049
> > One College Avenue
> > Grantham, Pa 17027
> >
> >
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>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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