I'll look into it. It seems to me there should be two CONECT sequences 
there, one for each model. How does that work? One thing you could try 
would be to ignore all conect records:

load ...
connect

for now, until I can track down why that is happening.

Bob



Rolf Huehne wrote:

>      Hi all,
>
>I noticed that Jmol 11.3.47 (also 11.3.39) displays cross-model bonds
>between atoms named in "CONECT" records in a PDB format file.
>
>You can see this for example at the following URL using biological unit
>1 file "5cev.pdb1":
>
>http://www.fli-leibniz.de/cgi-bin/3d_mapping.pl?MODE=biological1&CODE=5cev
>
>The atom 6812 is for example connected with atoms 5290, 5472, 5499, 6269
>of model 1 and model 2.
>
>I wouldn't expect this to be done on purpose as a default.
>
>---- Test System ----------------
> Jmol: 11.3.39, applet
>       11.3.47, application
> Java: 1.4.2_16
> OS  : Linux, OpenSuSE 10.2
>---------------------------------
>
>Regards,
>Rolf
>
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-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get. 

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900



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