Romuald,

Since there is no atom where you want, I don't think you can draw a bond. You 
can, 
however, draw a line between any two points

For example,
> I would like to connect the center of mass of an H2 molecule with a
> metal center. 
assuming those are the only two hydrogen atoms in the model, and that your 
metal is e.g. 
cobalt:

draw (_H) (_Co) 

or, as a general solution, you can use the atom IDs inside the parentheses:
draw (atomno=12, atomno=13) (atomno=25)

All is at 
http://chemapps.stolaf.edu/jmol/docs/#draw



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