Hi [EMAIL PROTECTED] 

You should be able to use any of these methods:

1. Script commands in the jmolApplet() call, as you have tried.
2. Apply the commands using jmolScript() in the web page [or any 
equivalent, like jmolButton()]
3. Read an external script file, either from jmolApplet() or 
jmolScript() 
4. Use "set defaultLoadScript", but of course this will apply to all 
models loaded 

If any doesn't work for you, it must be some different problem, I'd 
guess related to the javascript, or the file locations and paths.
Send me your example off-list if you want and I'll take a look.

·
 Dr. Angel Herráez
 Dep. Bioquímica y Biología Molecular, Universidad de Alcalá
 28871 Alcalá de Henares  (Madrid)
· · · · · · · · · · · · · · · · · · · · · · · · · · ·
Cómo utilizar Jmol para estudiar y presentar estructuras moleculares.
Angel Herráez.  ISBN 978-1-84753-710-2
Publicado en septiembre de 2007. 
http://stores.lulu.com/angel_herraez
.



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