Li Yang wrote: >Correction to previous email. Second example should be 2DHB >http://www.rcsb.org/pdb/files/2DBH.pdb > >-----Original Message----- >From: [EMAIL PROTECTED] >[mailto:[EMAIL PROTECTED] On Behalf Of Li Yang >Sent: Friday, February 15, 2008 5:25 PM >To: [email protected] >Subject: [Jmol-users] Bug with chain numbers of PBD files?? > >Hi, > >I am using Jmol 11.4.RC5 version of desktop application, and get wrong >number of chains ( and polymers) for PDB molecules. Here are two >examples: > >Open Jmol application, click on File->Open URL, type > >http://www.rcsb.org/pdb/files/1UBI.pdb > >>From the popup menu, it displayed 1UBI->Chains: 2. But 1UBI only have >one chain (from PDB side Jmol still show 1 chain.) > > > right -- one chain is the "empty chain" -- all the waters -- That's a bug. Corrected for 11.5.8 and 11.4.RC5
>Or open this URL > http://www.rcsb.org/pdb/files/1UBI.pdb > >>From the popup menu, it displayed 2DBH->Chains:3, polymers: 2. But >the >numbers should all be 1. PDB side Jmol shows 2DBH: chains:1 polymers: 1. > > > Jmol 11.4.RC5 and 11.5.7 both read "chains:1, polymers:1" after load =2dbh so I'm not sure what you are referring to here. >PDB site is still running Jmol version 10.2. Could Jmol developers >please check this issue? > > > absolutely! >Thanks, > >Li Yang > > >------------------------------------------------------------------------ >- >This SF.net email is sponsored by: Microsoft >Defy all challenges. Microsoft(R) Visual Studio 2008. >http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Microsoft >Defy all challenges. Microsoft(R) Visual Studio 2008. >http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
