Greetings - I'm hoping to get a suggestion on how I can troubleshoot a
problem I'm facing regarding the loading of user data. There are
computed scores that were generated for each atom and I'd like to
display as a color gradient.
Below is the script I am using. I'm using the applet and it seems to
hang at the last line... the console just says "pending" and just stays
there:
#####
load "protein.pdb"
set propertyAtomNumberField 1
set propertyDataField 2
# The file "atomData.dat" is a two-column data file
# with the first column being the atom number and the
# second column being the data value, for example:
# 2519 -1.038
# 2520 -1.038
# 2521 -1.038
# 2522 0.5235
# 2523 0.5235
x=load("atomData.dat")
select :i # data is for chain I
display :i # display only chain I
data "property_score @x"
propertyColorScheme = "bwr"
# Jmol applet hangs at this line
color property_score
#####
Any advice on how I should troubleshoot would be greatly appreciated.
Thanks,
Al
--
Alvin Ramsey, PhD.
Senior Researcher/Senior Systems Architect
[EMAIL PROTECTED]
703.998.5333
http://www.vecna.com
Vecna Technologies, Inc.
5205 Leesburg Pike, Suite 210
Falls Church, VA 22041
t: 703.998.5333
f: 703.998.5816
Better Technology, Better World (TM)
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