Hi again Tom. (Sorry to be late, the time shift)

1.- Everything in your page (using the files you sent me off-list) works OK 
here in local 
mode, so the problem as Bob advised must be specific to serving files from the 
web server.
Those of us who started with Chime before Jmol have got into the habit of using 
SPT 
extension for scripts, so we didn't find this before. Of course, you can use 
any extension as 
you wish, but it seems that no extension is dangerous.

2.- Isosurfaces: you should give a name to both, to avoid trouble. In addition, 
it seems that 
when you have several frames you must select each  frame before generating the 
isosurface. This is discussed here:
http://www.mail-archive.com/[email protected]/msg08941.html
and I have just tried a modification of your surfaces_AZ.script file that does 
indeed work, 
generating both isosurfaces:

frame 1;
select *:A;
isosurface prA ignore(*:Z or solvent) resolution 0 molecular translucent;

frame 2;
select *:Z;
isosurface ligZ ignore(protein or solvent) resolution 0 color green molecular 
translucent;



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