Hi Eran - I thought this sounded a lot like the problem that you folks
are having. Thank you for confirming the domain name aspect of it.
Question - So, i assume there is no problem as long as the DNS reverse
lookup IP address resolves to the domain name of the URL--
for example, published figures at Biochemical Journal work perfectly
(requires subscription):
http://www.biochemj.org/bj/410/0439/bj4100439add2.htm
--can you do a reverse lookup on that URL (I'm assuming you have a
subscription from the Weizmann...) and confirm that -- or tell me how
to do a reverse lookup myself?
Thanks,
Frieda
//////////////////////////////////////
Frieda Reichsman, PhD
Molecules in Motion
Interactive Molecular Structures
http://www.moleculesinmotion.com
413-253-2405
//////////////////////////////////////
On Apr 21, 2008, at 8:51 AM, Eran Hodis wrote:
Hi Frieda,
This is a issue we are dealing with in Proteopedia as well.
The combination of Firefox version 2 and Java version 1.6.0_03+
(latest stable release is 1.6.0_05) is more sensitive to security
issues.
When I do a reverse DNS lookup on the IP address you gave
(64.95.78.91) I get permaculture.gaiahost.coop. I'm guessing that
this name does not match the domain name of the website where you
are having these problems. This mismatch causes the combination of
FF2 and Java 1.6.0_03+. At least that is how I understand it at the
moment, and if anyone wants to correct me I'll be glad to be
corrected.
Regular commands seem to be passed ok to the Jmol applet, but
scripts or files stored on the server throw the error when you try
to execute or load them. The odd part is that any script or load
file commands inside the original definition of the applet works fine.
Rolf pointed out a message board dealing with the issue in one of
his previous messages I've copied below:
This looks like a problem we are also facing with our "JenaLib Jmol
Viewer" and Firefox. It started with Java version 1.6.0_03.
Since Egon uses 1.6.0_05 I would expect that he will also have the
same
"java.security.AccessControlException" problem with the following URL:
http://www.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1deh
I tried other Jmol sites and they worked fine with Java 1.6.0_03.
But I
couldn't figure out what makes the difference.
The following thread in the Java forum
"http://forum.java.sun.com/thread.jspa?threadID=5230759"; seems to
refer
to this problem. It is suggested there that the problem could be
avoided
by connecting back to the server before any liveconnect calls are
made.
But removing any callbacks didn't help with our viewer and I couldn't
detect any other liveconnect calls before loading the PDB file and
script from our server.
As explanation for the difference between InternetExplorer and
Firefox I
found the suggestion that the more stringent default security policy
of
Firefox is responsible for it.
Regards,
Rolf
Best regards,
Eran
On Mon, Apr 21, 2008 at 3:43 PM, Frieda Reichsman <[EMAIL PROTECTED]
> wrote:
CORRECTION - the pdb file does not load into the applet when all files
are placed into the same directory. SO the breakage is even worse in
this case.
script ERROR: java.security.AccessControlException: access denied
(java.net.SocketPermission 64.95.78.91:80 connect,resolve)
--------Sent previously, incorrect:
Placing all the files in the same directory (and changing all the file
calls) still results in a security error when a script is called by a
button:
//////////////////////////////////////
Frieda Reichsman, PhD
Molecules in Motion
Interactive Molecular Structures
http://www.moleculesinmotion.com
413-253-2405
//////////////////////////////////////
On Apr 21, 2008, at 8:06 AM, Frieda Reichsman wrote:
> I should have mentioned more about the problem - the Jmol loads just
> fine on the page and responds to the mouse, but the problem occurs
> when a script is called from a radio button, checkbox, etc. (Buttons
> that do not call scripts work fine.)
>
> Frieda
>
> //////////////////////////////////////
>
> Frieda Reichsman, PhD
> Molecules in Motion
> Interactive Molecular Structures
> http://www.moleculesinmotion.com
> 413-253-2405
>
> //////////////////////////////////////
>
>
>
>
>
>
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