Thomas, I'm not able to reproduce that problem. See, for example: http://chemapps.stolaf.edu/jmol/docs/examples-11/simple.htm?3bzi
or http://chemapps.stolaf.edu/pe/protexpl?id=3bzi Either it was something about 11.6.RC5 or there's still something odd there that I don't see. Bob Thomas Stout wrote: > > Hi Folks -- > > I'm working with the applet (version 11.6RC5 -- I can't keep up with > the versions!) and have just noticed the following: the display of > proteins in "backbone" or "cartoon" mode seems to be non-functional > for me. This is true for all PDB files that I've loaded so far, but > one example would be "3BZI". > > If I issue the following: > > load 3BZI.pdb # structure comes up in wireframe mode, all visible > select protein > backbone 0.33 # everything disappears except the waters and a formate > > spacefill off; > wireframe off; > backbone 0.33; # again, nothing visible > wireframe 0.1; # now the protein is visible again > wireframe off; > cartoon on; # now I see only the hetatms again > > > Using the pop-up menu gives the same results: > > > Select > protein > All # 1,865 atoms selected > > Style > Scheme > Ball-and-Stick # All visible > > Style > Scheme > Trace # Only waters and a > formate visible > > Style > Scheme > Cartoon # Only waters and a formate > visible > > Style > Scheme > Spacefill # All visible > > Style > Scheme > Sticks # All visible > > Style > Scheme > Wireframe # All visible > > Finally, I tried in the console: "calculate structure" and > re-displaying cartoons, backbone trace, etc and still had the same > above behavior. > > Has anyone seen -- or specifically NOT seen -- this as well? I don't > know if it just here or a general issue.... > Thanks, > Tom > > > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.Net email is sponsored by the Moblin Your Move Developer's challenge >Build the coolest Linux based applications with Moblin SDK & win great prizes >Grand prize is a trip for two to an Open Source event anywhere in the world >http://moblin-contest.org/redirect.php?banner_id=100&url=/ > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
