At long last, I have completed a version of the Jmol Tutorial-Authoring Template (JTAT) that I believe to be adequately documented, and fully functional (http://bioinformatics.org/jmol-tutorials). Improvements since I last put up a pre-release version (July 2008):
- Documentation on how to use the template, color key functions, etc. to author a tutorial has been completed. - A new chapter on DRuMS Color Schemes has been added to the JTAT Demonostration Tutorial. - The chapter on Animations and Movies in the JTAT Demonstration Tutorial has been clarified. - Functions are provided to easily generate standard color keys, and scripts are provided to apply the standard color schemes to molecular views. A Quick Reference page for color HTML is provided. - Support for checkboxes that modify the molecular view. Example: View 1 in the Demo Tutorial chapter on Color Schemes. - After centering an atom by clicking on it, the next time "Center Clicked" is checked, a new button appears for re-centering the entire molecule. - The links (at the bottom of every page in a tutorial) for further exploration of the molecules in the tutorial now support links to FirstGlance in Jmol that display modified or customized PDB files included in the tutorial, as well as the usual published PDB codes. - Jmol applet has been updated to the current version (11.6.RC12). Of course, the entire template and website is downloadable in a single file, jtat.zip. Caveat: I will be away from email until after September 20. Any questions, feedback, or things that I botched up will have to wait till after I get back. -Eric /* - - - - - - - - - - - - - - - - - - - - - - - - - - - Eric Martz, Professor Emeritus, Dept Microbiology U Mass, Amherst -- http://www.umass.edu/molvis/martz Top Five 3D MolVis Technologies http://Top5.MolviZ.Org 3D Wiki with Scene-Authoring Tools http://Proteopedia.Org Biochem 3D Education Resources http://MolviZ.org See 3D Molecules, Install Nothing! - http://firstglance.jmol.org Protein Explorer - 3D Visualization: http://proteinexplorer.org Workshops: http://workshops.proteinexplorer.org World Index of Molecular Visualization Resources: http://molvisindex.org ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il Atlas of Macromolecules: http://atlas.proteinexplorer.org PDB Lite Macromolecule Finder: http://pdblite.org Molecular Visualization EMail List (molvis-list): http://bioinformatics.org/mailman/listinfo/molvis-list - - - - - - - - - - - - - - - - - - - - - - - - - - - */ ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
