Here are two good references:
"Hydrogen bonding in globular proteins"
Journal of Molecular Biology, Volume 226, Issue 4, 20 August 1992, Pages
1143-1159
Douglas F. Sticke, Leonard G. Presta, Ken A. Dill, George D. Rose
and, more recently:
"The Occurence of C–H · · · O Hydrogen Bonds in Proteins"
*Journal of Molecular
Biology*<http://www.sciencedirect.com/science/journal/00222836>,
Volume 252, Issue
2<http://www.sciencedirect.com/science?_ob=PublicationURL&_tockey=%23TOC%236899%231995%23997479997%23314737%23FLT%23&_cdi=6899&_pubType=J&view=c&_auth=y&_acct=C000057278&_version=1&_urlVersion=0&_userid=2438774&md5=979a53bf08b37c03221feb235dce57b4>,
15 September 1995, Pages 248-262
Zygmunt S.
Derewendaf1<http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-45S977G-5K&_user=2438774&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000057278&_version=1&_urlVersion=0&_userid=2438774&md5=7bd9ae60b29d8a50a22e3d998be058f9#fn1>,
Linda Lee and Urszula Derewenda
* *The upshot of these finds additionally a body of putative H-bonds w/
atom--hydrogen***atom angles that are tetrahedral, so including 109.5 would
be a good idea...
-Tom
On Tue, Nov 4, 2008 at 3:26 PM, Thomas Stout <[EMAIL PROTECTED]> wrote:
>
> I'd have to go dig in the literature for a reference....it's just my
> personal guideline(s). I'll see what I can find -- most of that literature
> is pretty old....
>
> -Tom
>
>
>
> On Tue, Nov 4, 2008 at 3:23 PM, Robert Hanson <[EMAIL PROTECTED]> wrote:
>
>> Possibly. Is that documented or discussed somewhere in the literature?
>>
>> I could probably implement that tonight while watching the election
>> returns then let you try it out. I propose:
>>
>> calculate hbonds {atomset1} {atomset2}
>>
>> maybe with some settings for minimum and maximum distances.
>>
>> Bob
>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
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