Hi Jaime Have you checked http://wiki.jmol.org:81/index.php/File_formats#Open_DX ? There is some info and 3 links there
I've done some test, and this looks like a bug. My DX file loads Ok in 11.2.14, 11.4.6, 11.5.6, but not in 11.6.4 After load "lisozima.pdb"; isosurface "lisozima.pqr.potential.dx" The error is # Jmol 11.6.4 FileManager opening F:/webs/biomodel/Jmol/surfaces/APBS-Gemstone/lisozima.pdb FileManager.openFile(F:/webs/biomodel/Jmol/surfaces/APBS-Gemstone/lisozima.pdb) //F:/webs/biomodel/Jmol/surfaces/APBS-Gemstone/lisozima.pdb FileManager opening F:\webs\biomodel\Jmol\surfaces\APBS-Gemstone\lisozima.pdb The Resolver thinks Pdb openFile(F:/webs/biomodel/Jmol/surfaces/APBS-Gemstone/lisozima.pdb): 81 ms ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. ModelSet: autobonding; use autobond=false to not generate bonds automatically isosurface "lisozima.pqr.potential.dx"; FileManager opening F:\webs\biomodel\Jmol\surfaces\APBS- Gemstone\lisozima.pqr.potential.dx reading isosurface data from F:/webs/biomodel/Jmol/surfaces/APBS- Gemstone/lisozima.pqr.potential.dx data file type was determined to be Apbs # Data from APBS 0.4.0 # # POTENTIAL (kT/e) # APBS OpenDx DATA object 1 class gridpositions counts 97 97 97 see http://apbs.sourceforge.net voxel grid origin:(-39.225002, -18.002499, -20.6175) voxel grid count/vector:97 0.8333333 0.0 0.0 voxel grid count/vector:97 0.0 0.8333333 0.0 voxel grid count/vector:-2147483648 0.0 0.0 0.8333333 Read 97 x 97 x -2147483648 data points Exception in thread "QueueThread0" java.lang.NullPointerException at org.jmol.jvxl.calc.MarchingCubes.<init>(Unknown Source) at org.jmol.jvxl.readers.VoxelReader.generateSurfaceData(Unknown Source) at org.jmol.jvxl.readers.VoxelReader.createIsosurface(Unknown Source) at org.jmol.jvxl.readers.SurfaceGenerator.generateSurface(Unknown Source) at org.jmol.jvxl.readers.SurfaceGenerator.setParameter(Unknown Source) at org.jmol.shapesurface.Isosurface.setProperty(Unknown Source) at org.jmol.modelset.ModelSet.setShapeProperty(Unknown Source) at org.jmol.viewer.Viewer.setShapeProperty(Unknown Source) at org.jmol.viewer.Eval.setShapeProperty(Unknown Source) at org.jmol.viewer.Eval.isosurface(Unknown Source) at org.jmol.viewer.Eval.instructionDispatchLoop(Unknown Source) at org.jmol.viewer.Eval.runEval(Unknown Source) at org.jmol.viewer.Viewer.evalStringWaitStatus(Unknown Source) at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.runScript(Unknown Source) at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.runNextScript(Unknown Source) at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.run(Unknown Source) at java.lang.Thread.run(Unknown Source) ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
