Thanks, Rolf. I was suspecting something of the sort.

But now the issue is (at least in the Wiki environment, but I'd think it is so 
in general), that 
the  unsigned applet is adding the server URL before the given (absolute) path, 
while the 
signed applet is inserting nothing.

For the signed applet to work in the wiki, the path provided by the wiki needs 
to be inserted.

I will see what happens if I omit the initial /
but I guess that's going to be trouble, since the wiki root is not the same as 
the server root.

Path given in the wiki:
        Butane.pdb
Path resolved by the extension and passed onto Jmol.js:
        /mediawiki-1.11.0/images/d/d3/Butane.pdb
(which is the real location of the file whose wiki address is Image:Butane.pdb )

Path requested by the unsigned applet:
        http://127.0.0.1/mediawiki-1.11.0/images/d/d3/Butane.pdb
since I am using a local server.

Path requested by the signed applet:
        file:/mediawiki-1.11.0/images/d/d3/Butane.pdb

Rolf wrote:
> This is how Bob designed it. In response to my objections the unsigned  
> applet still allows using a server absolute path as it used to be  
> before version 11.6. But for the signed applet this is interpreted as  
> a file system and not server absolute path.

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